HL_7JSW_098
3D structure
- PDB id
- 7JSW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7JSW_098 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.1823
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7JSW|1|3|C|1314
7JSW|1|3|U|1315
7JSW|1|3|G|1316
7JSW|1|3|C|1317
7JSW|1|3|A|1318
7JSW|1|3|A|1319
7JSW|1|3|C|1320
7JSW|1|3|U|1321
7JSW|1|3|C|1322
7JSW|1|3|G|1323
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain R
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
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