3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
7JSW|1|3|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JSW_099 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.214
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7JSW|1|3|G|1356
7JSW|1|3|A|1357
7JSW|1|3|U|1358
7JSW|1|3|C|1359
7JSW|1|3|A|1360
7JSW|1|3|G|1361
7JSW|1|3|A|1362
7JSW|1|3|A|1363
7JSW|1|3|U|1364
7JSW|1|3|G|1365
7JSW|1|3|C|1366

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain H
30S ribosomal protein S3
Chain N
30S ribosomal protein S9
Chain O
30S ribosomal protein S10
Chain S
30S ribosomal protein S14

Coloring options:


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