HL_7JSZ_065

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7JSZ|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1209

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7JSZ|1|1|C|2745
7JSZ|1|1|U|2746
7JSZ|1|1|G|2747
7JSZ|1|1|A|2748
7JSZ|1|1|A|2749
7JSZ|1|1|A|2750
7JSZ|1|1|G|2751
7JSZ|1|1|C|2752
7JSZ|1|1|A|2753
7JSZ|1|1|U|2754
7JSZ|1|1|C|2755
7JSZ|1|1|U|2756
7JSZ|1|1|A|2757
7JSZ|1|1|A|2758
7JSZ|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13