HL_7JSZ_066

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

7JSZ|1|1|U|2797, 7JSZ|1|1|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_066 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3929

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7JSZ|1|1|C|2795
7JSZ|1|1|U|2796
7JSZ|1|1|U|2797
7JSZ|1|1|U|2798
7JSZ|1|1|A|2799
7JSZ|1|1|A|2800
7JSZ|1|1|G|2801

Current chains

Chain 1

23S ribosomal RNA

Nearby chains