HL_7JSZ_083

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JSZ_083 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2628

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7JSZ|1|3|C|522
7JSZ|1|3|A|523
7JSZ|1|3|G|524
7JSZ|1|3|C|525
7JSZ|1|3|C|526
7JSZ|1|3|G|527

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 8

Peptidyl-tRNA hydrolase ArfB

Chain Q

30S ribosomal protein S12