HL_7JT1_027

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7JT1|1|1|U|1066, 7JT1|1|1|G|1068, 7JT1|1|1|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT1_027 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3527

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7JT1|1|1|C|1064
7JT1|1|1|U|1065
7JT1|1|1|U|1066
7JT1|1|1|A|1067
7JT1|1|1|G|1068
7JT1|1|1|A|1069
7JT1|1|1|A|1070
7JT1|1|1|G|1071
7JT1|1|1|C|1072
7JT1|1|1|A|1073
7JT1|1|1|G|1074

Current chains

Chain 1

23S ribosomal RNA

Nearby chains