HL_7JT2_026

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

7JT2|1|1|A|983, 7JT2|1|1|A|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_026 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.2104

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7JT2|1|1|G|978
7JT2|1|1|A|979
7JT2|1|1|A|980
7JT2|1|1|A|981
7JT2|1|1|C|982
7JT2|1|1|A|983
7JT2|1|1|A|984
7JT2|1|1|C|985

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21

Chain z

50S ribosomal protein L30