HL_7JT2_029

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

7JT2|1|1|U|1174, 7JT2|1|1|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_029 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3961

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7JT2|1|1|G|1171
7JT2|1|1|C|1172
7JT2|1|1|U|1173
7JT2|1|1|U|1174
7JT2|1|1|A|1175
7JT2|1|1|U|1176
7JT2|1|1|G|1177
7JT2|1|1|C|1178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15