HL_7JT2_053

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7JT2|1|1|A|2268, 7JT2|1|1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0947

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7JT2|1|1|C|2264
7JT2|1|1|U|2265
7JT2|1|1|A|2266
7JT2|1|1|A|2267
7JT2|1|1|A|2268
7JT2|1|1|G|2269
7JT2|1|1|A|2270
7JT2|1|1|G|2271
7JT2|1|1|U|2272
7JT2|1|1|A|2273
7JT2|1|1|A|2274
7JT2|1|1|C|2275
7JT2|1|1|G|2276

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27