HL_7JT2_066

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

7JT2|1|1|U|2797, 7JT2|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_066 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3979

The information below is about HL_6VMY_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7JT2|1|1|C|2795
7JT2|1|1|U|2796
7JT2|1|1|U|2797
7JT2|1|1|U|2798
7JT2|1|1|A|2799
7JT2|1|1|A|2800
7JT2|1|1|G|2801

Current chains

Chain 1

23S ribosomal RNA

Nearby chains