HL_7JT2_094

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7JT2|1|3|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT2_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1631

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7JT2|1|3|G|1089
7JT2|1|3|U|1090
7JT2|1|3|U|1091
7JT2|1|3|A|1092
7JT2|1|3|A|1093
7JT2|1|3|G|1094
7JT2|1|3|U|1095
7JT2|1|3|C|1096

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain L

30S ribosomal protein S7

Chain Z

30S ribosomal protein S21