HL_7JT3_001

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

7JT3|1|1|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_001 not in the Motif Atlas

Homologous match to HL_7A0S_001

Geometric discrepancy: 0.5238

The information below is about HL_7A0S_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_93438.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7JT3|1|1|U|59
7JT3|1|1|G|60
7JT3|1|1|C|61
7JT3|1|1|U|62
7JT3|1|1|A|63
7JT3|1|1|A|64
7JT3|1|1|U|65
7JT3|1|1|C|66
7JT3|1|1|U|67
7JT3|1|1|G|68

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23

Chain y

50S ribosomal protein L29