RNA 3D Hub //

7JT3 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7JT3_0011/1/59:68Pseudoknot with intercalation
homologous
HL_7A0S_001
HL_17803.1
HL_7JT3_0021/1/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_7JT3_0031/1/123:128No text annotation
homologous
HL_5J7L_136
NA
HL_7JT3_0061/1/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_7JT3_0071/1/225:230No text annotation
homologous
HL_7A0S_007
HL_51020.2
HL_7JT3_0081/1/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_7JT3_0101/1/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_7JT3_0111/1/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_7JT3_0121/1/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_7JT3_0131/1/462:467GNRA
homologous
HL_4WF9_015
HL_34789.2
HL_7JT3_0141/1/487:493GNRA
homologous
HL_5J7L_148
NA
HL_7JT3_0161/1/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_7JT3_0181/1/629:634GNRA
homologous
HL_5J7L_152
NA
HL_7JT3_1061/1/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_7JT3_0211/1/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_7JT3_0221/1/779:785No text annotation
geometric
HL_7A0S_007
HL_51020.2
HL_7JT3_0231/1/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_7JT3_0251/1/955:962GNRA
homologous
HL_7A0S_026
HL_34789.2
HL_7JT3_0261/1/978:985No text annotation
homologous
HL_7A0S_027
HL_47171.1
HL_7JT3_0301/1/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_7JT3_0311/1/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_7JT3_0321/1/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_7JT3_0331/1/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_7JT3_0341/1/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_7JT3_0351/1/1450:1461No text annotation
geometric
HL_5TBW_012
NA
HL_7JT3_0381/1/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_7JT3_0391/1/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_7JT3_0401/1/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_7JT3_0411/1/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_7JT3_0431/1/1752:1756No text annotation
homologous
HL_5J7L_177
NA
HL_7JT3_0441/1/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_7JT3_0451/1/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_7JT3_0481/1/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_7JT3_0491/1/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_7JT3_0511/1/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_7JT3_0531/1/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_7JT3_0551/1/2324:2331Pseudoknot geometry
homologous
HL_4WF9_052
HL_52651.2
HL_7JT3_0561/1/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_7JT3_0581/1/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_7JT3_0591/1/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_7JT3_0601/1/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_7JT3_0611/1/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_7JT3_0621/1/2594:2599GNRA
homologous
HL_5J7L_196
NA
HL_7JT3_0641/1/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_7JT3_0671/1/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_7JT3_0681/1/2856:2861GNRA
homologous
HL_5J7L_202
NA
HL_7JT3_0691/2/38:44No text annotation
geometric
HL_5J7L_203
NA
HL_7JT3_0701/2/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_7JT3_0891/3/862:867GNRA
homologous
HL_5J7L_019
NA

Problematic loops

#loop idProblemSequence
HL_7JT3_004No text annotation
HL_7JT3_005No text annotation
HL_7JT3_009T-loop with 2 stacked bulged bases
HL_7JT3_015No text annotation
HL_7JT3_105Mini UNCG with extended bulge
HL_7JT3_017No text annotation
HL_7JT3_019GNRA wlth extra near cWW
HL_7JT3_020GNRA wlth tandem sheared
HL_7JT3_024No text annotation
HL_7JT3_027No text annotation
HL_7JT3_028No text annotation
HL_7JT3_029No text annotation
HL_7JT3_036Pseudoknot geometry with 3' bulge
HL_7JT3_037No text annotation
HL_7JT3_107No text annotation
HL_7JT3_042No text annotation
HL_7JT3_046No text annotation
HL_7JT3_047No text annotation
HL_7JT3_050No text annotation
HL_7JT3_108No text annotation
HL_7JT3_109No text annotation
HL_7JT3_052No text annotation
HL_7JT3_054No text annotation
HL_7JT3_111No text annotation
HL_7JT3_057GNRA
HL_7JT3_063GNRA
HL_7JT3_065No text annotation
HL_7JT3_066UNCG variation
HL_7JT3_071No text annotation
HL_7JT3_110No text annotation
HL_7JT3_072No text annotation
HL_7JT3_112No text annotation
HL_7JT3_073GNRA
HL_7JT3_074GNRA
HL_7JT3_075No text annotation
HL_7JT3_076GNRA related
HL_7JT3_077GNRA
HL_7JT3_078No text annotation
HL_7JT3_079UNCG
HL_7JT3_080GNRA
HL_7JT3_081UNCG
HL_7JT3_082GNRA wlth extra near cWW
HL_7JT3_083No text annotation
HL_7JT3_084GNRA-like with tWH
HL_7JT3_085No text annotation
HL_7JT3_086GNRA
HL_7JT3_087No text annotation
HL_7JT3_088No text annotation
HL_7JT3_090GNRA
HL_7JT3_091No text annotation
HL_7JT3_092GNRA
HL_7JT3_093No text annotation
HL_7JT3_094T-loop related
HL_7JT3_095No text annotation
HL_7JT3_096GNRA
HL_7JT3_097GNRA
HL_7JT3_098T-loop with 3 stacked bulged bases
HL_7JT3_099No text annotation
HL_7JT3_100UNCG
HL_7JT3_101GNRA
HL_7JT3_102No text annotation
HL_7JT3_103tRNA anticodon loop
HL_7JT3_104T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7JT3_0011/1/24:30,
1/1/510:516		Triple sheared with non-canonical cWW
geometric
IL_4WF9_001
IL_22311.1
IL_7JT3_0021/1/36:37,
1/1/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_7JT3_0051/1/183:184,
1/1/212:214		Single stack bend
homologous
IL_7A0S_005
IL_15011.2
IL_7JT3_0061/1/188:194,
1/1/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_250
NA
IL_7JT3_0071/1/239:245,
1/1/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_7JT3_0111/1/481:484,
1/1/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_7JT3_0121/1/536:539,
1/1/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_7JT3_0131/1/564:566,
1/1/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_7JT3_0141/1/606:610,
1/1/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_7JT3_0151/1/672:674,
1/1/806:808		Isolated non-canonical cWW pair
homologous
IL_5J7L_259
NA
IL_7JT3_0161/1/674:678,
1/1/799:806		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_7JT3_0171/1/697:698,
1/1/763:765		Single bulged A
geometric
IL_5J7L_261
NA
IL_7JT3_0181/1/702:703,
1/1/728:730		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_7JT3_0191/1/703:707,
1/1/724:728		Triple sheared
homologous
IL_7RQB_021
NA
IL_7JT3_0201/1/738:740,
1/1/757:758		Major groove platform
homologous
IL_5J7L_264
NA
IL_7JT3_0211/1/775:777,
1/1/787:791		Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_7JT3_0221/1/837:838,
1/1/940:942		Single stack bend
homologous
IL_5J7L_266
NA
IL_7JT3_0231/1/844:847,
1/1/933:934		90 degree turn
homologous
IL_5J7L_267
NA
IL_7JT3_1771/1/844:848,
1/1/930:934		No text annotation
homologous
IL_5J7L_399
NA
IL_7JT3_0241/1/847:848,
1/1/930:933		Stack outside cWW
geometric
IL_5J7L_268
NA
IL_7JT3_0251/1/850:851,
1/1/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_7JT3_0261/1/856:862,
1/1/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_7JT3_0271/1/862:863,
1/1/913:915		Single bulged G
homologous
IL_5J7L_271
NA
IL_7JT3_0281/1/864:868,
1/1/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_7JT3_0321/1/994:996,
1/1/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_7JT3_0331/1/998:1002,
1/1/1153:1157		UAA/GAN
homologous
IL_5J7L_277
NA
IL_7JT3_0341/1/1004:1011,
1/1/1150:1151		SSU/LSU pseudoknot
homologous
IL_5J7L_278
NA
IL_7JT3_0351/1/1011:1013,
1/1/1149:1150		Single bulged U
geometric
IL_5J7L_279
NA
IL_7JT3_0361/1/1018:1024,
1/1/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_7JT3_0371/1/1024:1030,
1/1/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_7JT3_0381/1/1031:1034,
1/1/1121:1123		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_7JT3_0431/1/1196:1198,
1/1/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_7JT3_0441/1/1202:1206,
1/1/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_7JT3_0451/1/1208:1215,
1/1/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_7JT3_0461/1/1262:1269,
1/1/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_7JT3_0471/1/1310:1313,
1/1/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_7JT3_0481/1/1319:1323,
1/1/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_7JT3_0491/1/1351:1355,
1/1/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_7JT3_0501/1/1357:1361,
1/1/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_7JT3_0531/1/1432:1435,
1/1/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_7JT3_0541/1/1437:1440,
1/1/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_7JT3_0551/1/1468:1471,
1/1/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_7JT3_0601/1/1651:1656,
1/1/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_7JT3_0611/1/1663:1665,
1/1/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_7JT3_0621/1/1666:1669,
1/1/1993:1994		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_7JT3_1801/1/1666:1674,
1/1/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_7JT3_0631/1/1669:1674,
1/1/1990:1993		Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_7JT3_0641/1/1686:1691,
1/1/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_7JT3_0661/1/1720:1724,
1/1/1736:1740		Triple sheared
homologous
IL_5J7L_310
NA
IL_7JT3_0681/1/1770:1771,
1/1/1980:1982		Single bulged A
homologous
IL_5J7L_312
NA
IL_7JT3_0691/1/1798:1804,
1/1/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_7JT3_0701/1/1837:1840,
1/1/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_7JT3_0711/1/1841:1842,
1/1/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_7JT3_0721/1/1846:1849,
1/1/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_7JT3_1811/1/1851:1860,
1/1/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_7JT3_0731/1/1864:1867,
1/1/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_7JT3_0741/1/1933:1934,
1/1/1964:1967		Bulged stacked bases
homologous
IL_4WF9_076
IL_24886.2
IL_7JT3_0751/1/1934:1945,
1/1/1961:1964		No text annotation
geometric
IL_4WF9_077
IL_84014.1
IL_7JT3_0761/1/2050:2052,
1/1/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_7JT3_0771/1/2054:2056,
1/1/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_7JT3_0781/1/2067:2069,
1/1/2442:2443		Single bulged U
homologous
IL_4WF9_080
IL_97561.2
IL_7JT3_0791/1/2070:2071,
1/1/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_7JT3_0801/1/2081:2083,
1/1/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_7JT3_0811/1/2085:2087,
1/1/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_7JT3_0851/1/2350:2353,
1/1/2364:2367		Double sheared
homologous
IL_4WF9_087
IL_58355.2
IL_7JT3_0871/1/2453:2454,
1/1/2498:2500		Single stack bend
homologous
IL_4WF9_089
IL_15011.2
IL_7JT3_0881/1/2454:2455,
1/1/2496:2498		Major groove platform
geometric
IL_4WF9_090
IL_48076.8
IL_7JT3_0891/1/2457:2459,
1/1/2493:2494		Major groove platform
geometric
IL_7A0S_085
IL_48076.8
IL_7JT3_0901/1/2459:2461,
1/1/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_7JT3_0911/1/2466:2470,
1/1/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_7JT3_0921/1/2507:2508,
1/1/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_7JT3_0931/1/2510:2512,
1/1/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_7JT3_0941/1/2512:2513,
1/1/2571:2574		No text annotation
geometric
IL_5J7L_341
NA
IL_7JT3_0951/1/2522:2523,
1/1/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_7JT3_0961/1/2591:2592,
1/1/2601:2603		Single bulged A
homologous
IL_5J7L_344
NA
IL_7JT3_0971/1/2636:2640,
1/1/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_7JT3_0991/1/2680:2684,
1/1/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_7JT3_1001/1/2687:2691,
1/1/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_7JT3_1011/1/2695:2696,
1/1/2711:2714		Multiple bulged bases
homologous
IL_4WF9_103
IL_44609.2
IL_7JT3_1021/1/2737:2742,
1/1/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_7JT3_1031/1/2806:2811,
1/1/2889:2892		No text annotation
geometric
IL_5J7L_351
NA
IL_7JT3_1041/1/2838:2839,
1/1/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
NA
IL_7JT3_1051/1/2843:2846,
1/1/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_7JT3_1061/1/2847:2852,
1/1/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA
IL_7JT3_1111/2/71:79,
1/2/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_7JT3_1141/3/47:52,
1/3/359:361		No text annotation
geometric
IL_5J7L_003
NA
IL_7JT3_1371/3/569:575,
1/3/880:881		No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_7JT3_1381/3/580:584,
1/3/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_7JT3_1481/3/887:894,
1/3/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_7JT3_1731/3/1416:1419,
1/3/1481:1484		Double sheared
homologous
IL_6CZR_169
NA

Problematic loops

#loop idProblemSequence
IL_7JT3_003Minor groove platform
IL_7JT3_004No text annotation
IL_7JT3_008No text annotation
IL_7JT3_186No text annotation
IL_7JT3_009No text annotation
IL_7JT3_010No text annotation
IL_7JT3_029Isolated non-canonical cWW pair
IL_7JT3_030Double sheared with non-canonical cWW
IL_7JT3_187No text annotation
IL_7JT3_178No text annotation
IL_7JT3_031No text annotation
IL_7JT3_039Tandem non-canonical cWW pairs
IL_7JT3_040Kink-turn
IL_7JT3_041No text annotation
IL_7JT3_179No text annotation
IL_7JT3_188Major groove platform
IL_7JT3_042Major groove platform with extra cWW
IL_7JT3_051No text annotation
IL_7JT3_052UAA/GAN
IL_7JT3_056tSH-tHW-tHS
IL_7JT3_057180 degree turn
IL_7JT3_058Single bulged A
IL_7JT3_059UAA/GAN variation
IL_7JT3_0656x5 Sarcin-Ricin; G-bulge
IL_7JT3_067Single bulged C
IL_7JT3_082Tandem non-canonical cWW pairs
IL_7JT3_189Isolated non-canonical cWW pair
IL_7JT3_083No text annotation
IL_7JT3_182No text annotation
IL_7JT3_084Single bulged U
IL_7JT3_086No text annotation
IL_7JT3_098Sarcin-Ricin target in LSU H95; G-bulge
IL_7JT3_107Major groove intercalation
IL_7JT3_108No text annotation
IL_7JT3_109Major groove minor groove platform; mini C-loop
IL_7JT3_110Symmetric double minor groove platform
IL_7JT3_112Single bulged G
IL_7JT3_113Single bulged A
IL_7JT3_115Minor groove platform
IL_7JT3_116Multiple bulged bases
IL_7JT3_117Minor groove platform with extra cWW
IL_7JT3_118Minor groove platform
IL_7JT3_119No text annotation
IL_7JT3_120Isolated non-canonical cWW pair
IL_7JT3_121Minor groove platform related
IL_7JT3_122Isolated cWH basepair
IL_7JT3_123tWH-tWH-tHW-tHW
IL_7JT3_124Minor groove platform
IL_7JT3_125Kink-turn with non-sequential stacking
IL_7JT3_126No text annotation
IL_7JT3_127C-loop
IL_7JT3_128Single bulged U
IL_7JT3_129C-loop
IL_7JT3_130Single bulged G
IL_7JT3_131No text annotation
IL_7JT3_132Isolated non-canonical cWW with bulges
IL_7JT3_133tSH-tHW-tWW
IL_7JT3_134No text annotation
IL_7JT3_135SSU/LSU pseudoknot
IL_7JT3_136Kink-turn related
IL_7JT3_183Major groove platform
IL_7JT3_139Major groove platform with extra cWW
IL_7JT3_140Major groove minor groove platform; mini C-loop
IL_7JT3_141No text annotation
IL_7JT3_142Major groove platform; stack outside cWW
IL_7JT3_143Single stack bend
IL_7JT3_144Tandem non-canonical cWW pairs
IL_7JT3_145Kink-turn
IL_7JT3_146Left turn
IL_7JT3_147tSH-tHW-tHS
IL_7JT3_149Single bulged A
IL_7JT3_150Tandem non-canonical cWW pairs
IL_7JT3_190Single bulged G
IL_7JT3_151Minor groove platform
IL_7JT3_152No text annotation
IL_7JT3_153Minor groove platform
IL_7JT3_154Single stack bend
IL_7JT3_155No text annotation
IL_7JT3_156Single bulged U
IL_7JT3_157tSH-tHW
IL_7JT3_158Minor groove platform
IL_7JT3_159Single bulged U
IL_7JT3_160Isolated non-canonical cWW pair
IL_7JT3_161No text annotation
IL_7JT3_162Minor groove platform
IL_7JT3_163No text annotation
IL_7JT3_164No text annotation
IL_7JT3_165180 degree turn
IL_7JT3_166Double sheared with non-canonical cWW
IL_7JT3_167No text annotation
IL_7JT3_168No text annotation
IL_7JT3_169No text annotation
IL_7JT3_170Other IL
IL_7JT3_171Isolated non-canonical cWW pair
IL_7JT3_172Isolated non-canonical cWW pair
IL_7JT3_174Triple sheared related
IL_7JT3_175Major groove platform with extra cWW
IL_7JT3_184Single bulged A
IL_7JT3_176No text annotation
IL_7JT3_185No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7JT3_0011/1/30:31,
1/1/474:481,
1/1/509:510		No text annotation
homologous
J3_5J7L_036
NA
J3_7JT3_0251/1/30:31,
1/1/474:484,
1/1/496:510		No text annotation
homologous
J3_5J7L_066
NA
J3_7JT3_0261/1/32:35,
1/1/445:461,
1/1/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_7JT3_0021/1/56:57,
1/1/70:76,
1/1/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_7JT3_0381/1/297:301,
1/1/316:325,
1/1/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_7JT3_0031/1/683:689,
1/1/773:775,
1/1/791:794		No text annotation
homologous
J3_7RQB_004
NA
J3_7JT3_0041/1/698:700,
1/1/732:736,
1/1/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_7JT3_0061/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_7JT3_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_7JT3_0081/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_7JT3_0281/1/1424:1429,
1/1/1564:1565,
1/1/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_7JT3_0091/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_7JT3_0291/1/2282:2284,
1/1/2384:2395,
1/1/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_7JT3_0101/1/2295:2299,
1/1/2317:2323,
1/1/2332:2337		No text annotation
J3_7JT3_0111/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_7JT3_0141/2/10:16,
1/2/68:70,
1/2/106:110		No text annotation
homologous
J3_5J7L_049
NA
J3_7JT3_0301/3/46:52,
1/3/359:367,
1/3/393:395		No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_7JT3_0171/3/826:829,
1/3/857:861,
1/3/868:874		No text annotation
homologous
J3_5J7L_004
NA
J4_7JT3_0011/1/268:269,
1/1/370:375,
1/1/399:406,
1/1/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_7JT3_0021/1/601:604,
1/1/624:628,
1/1/635:638,
1/1/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_7JT3_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_7JT3_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_7JT3_0051/1/1313:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_7JT3_0061/1/1444:1445,
1/1/1466:1467,
1/1/1525:1526,
1/1/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J4_7JT3_0071/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_7JT3_0081/1/1833:1835,
1/1/1905:1906,
1/1/1924:1933,
1/1/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_7JT3_0091/1/2285:2289,
1/1/2343:2347,
1/1/2370:2372,
1/1/2381:2383		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_7JT3_0101/1/2643:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J4_7JT3_0111/3/115:122,
1/3/239:240,
1/3/286:289,
1/3/311:312		No text annotation
homologous
J4_5J7L_001
NA
J4_7JT3_0131/3/575:577,
1/3/764:769,
1/3/810:821,
1/3/879:880		No text annotation
homologous
J4_5J7L_003
NA
J5_7JT3_0011/1/47:54,
1/1/116:121,
1/1/130:131,
1/1/148:150,
1/1/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_7JT3_0021/1/531:533,
1/1/560:564,
1/1/577:579,
1/1/1261:1262,
1/1/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_7JT3_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256		No text annotation
homologous
J5_7A0S_004
J5_74302.6
J5_7JT3_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_7JT3_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2588,
1/1/2606:2611		No text annotation
J5_7JT3_0061/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2282,
1/1/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_7JT3_0091/3/58:61,
1/3/106:113,
1/3/314:316,
1/3/337:339,
1/3/350:354		No text annotation
homologous
J5_5J7L_003
NA
J6_7JT3_0011/1/45:46,
1/1/179:183,
1/1/214:224,
1/1/231:235,
1/1/262:266,
1/1/426:433		No text annotation
J6_7JT3_0021/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2435		No text annotation
J7_7JT3_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895		No text annotation
J7_7JT3_0021/1/817:822,
1/1/835:837,
1/1/942:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_7JT3_027No text annotation
J3_7JT3_005No text annotation
J3_7JT3_012No text annotation
J3_7JT3_013No text annotation
J3_7JT3_015No text annotation
J3_7JT3_016No text annotation
J3_7JT3_031No text annotation
J3_7JT3_032No text annotation
J3_7JT3_033No text annotation
J3_7JT3_018No text annotation
J3_7JT3_034No text annotation
J3_7JT3_019No text annotation
J3_7JT3_020No text annotation
J3_7JT3_035No text annotation
J3_7JT3_021No text annotation
J3_7JT3_036No text annotation
J3_7JT3_022No text annotation
J3_7JT3_023No text annotation
J3_7JT3_037No text annotation
J3_7JT3_024No text annotation
J4_7JT3_012No text annotation
J4_7JT3_014tRNA junction
J5_7JT3_007No text annotation
J5_7JT3_008No text annotation

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