3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
7JT3|1|1|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7JT3_016 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.1533
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

7JT3|1|1|U|566
7JT3|1|1|U|567
7JT3|1|1|U|568
7JT3|1|1|U|569
7JT3|1|1|G|570
7JT3|1|1|U|571
7JT3|1|1|A|572
7JT3|1|1|U|573
7JT3|1|1|A|574
7JT3|1|1|A|575

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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