HL_7JT3_021

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUCGAAAAA

Length

10 nucleotides

Bulged bases

7JT3|1|1|C|747, 7JT3|1|1|A|751, 7JT3|1|1|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_021 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1376

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7JT3|1|1|U|744
7JT3|1|1|G|745
7JT3|1|1|U|746
7JT3|1|1|C|747
7JT3|1|1|G|748
7JT3|1|1|A|749
7JT3|1|1|A|750
7JT3|1|1|A|751
7JT3|1|1|A|752
7JT3|1|1|A|753

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain D

50S ribosomal protein L34

Chain c

50S ribosomal protein L3

Chain s

50S ribosomal protein L22