HL_7JT3_024

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

7JT3|1|1|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_024 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5949

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

7JT3|1|1|U|884
7JT3|1|1|C|885
7JT3|1|1|A|886
7JT3|1|1|U|887
7JT3|1|1|C|888
7JT3|1|1|C|889
7JT3|1|1|C|890
7JT3|1|1|G|891
7JT3|1|1|A|892

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain X

30S ribosomal protein S19