HL_7JT3_055

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_055 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1182

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7JT3|1|1|U|2324
7JT3|1|1|G|2325
7JT3|1|1|C|2326
7JT3|1|1|A|2327
7JT3|1|1|A|2328
7JT3|1|1|U|2329
7JT3|1|1|G|2330
7JT3|1|1|G|2331

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5

Chain w

50S ribosomal protein L27