HL_7JT3_065

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7JT3|1|1|G|2751, 7JT3|1|1|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1308

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7JT3|1|1|C|2745
7JT3|1|1|U|2746
7JT3|1|1|G|2747
7JT3|1|1|A|2748
7JT3|1|1|A|2749
7JT3|1|1|A|2750
7JT3|1|1|G|2751
7JT3|1|1|C|2752
7JT3|1|1|A|2753
7JT3|1|1|U|2754
7JT3|1|1|C|2755
7JT3|1|1|U|2756
7JT3|1|1|A|2757
7JT3|1|1|A|2758
7JT3|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13