HL_7JT3_082

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.5405

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7JT3|1|3|G|462
7JT3|1|3|U|463
7JT3|1|3|U|464
7JT3|1|3|A|465
7JT3|1|3|A|466
7JT3|1|3|U|467
7JT3|1|3|A|468
7JT3|1|3|C|469
7JT3|1|3|C|470

Current chains

Chain 3

16S ribosomal RNA

Nearby chains