HL_7JT3_083

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7JT3_083 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1965

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7JT3|1|3|C|522
7JT3|1|3|A|523
7JT3|1|3|G|524
7JT3|1|3|C|525
7JT3|1|3|C|526
7JT3|1|3|G|527

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 8

Peptidyl-tRNA hydrolase ArfB

Chain Q

30S ribosomal protein S12