HL_7K00_048

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7K00|1|a|G|329, 7K00|1|a|A|330, 7K00|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K00_048 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0736

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7K00|1|a|G|327
7K00|1|a|U|328
7K00|1|a|G|329
7K00|1|a|A|330
7K00|1|a|C|331
7K00|1|a|A|332
7K00|1|a|G|333
7K00|1|a|C|334
7K00|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24