3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
CGACGGUUG
Length
9 nucleotides
Bulged bases
7K00|1|a|A|1453, 7K00|1|a|C|1454
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7K00_070 not in the Motif Atlas
Homologous match to HL_5J7L_169
Geometric discrepancy: 0.0849
The information below is about HL_5J7L_169
Detailed Annotation
Mini UNCG with extended bulge
Broad Annotation
Mini UNCG with extended bulge
Motif group
HL_22622.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

7K00|1|a|C|1451
7K00|1|a|G|1452
7K00|1|a|A|1453
7K00|1|a|C|1454
7K00|1|a|G|1455
7K00|1|a|G|1456
7K00|1|a|U|1457
7K00|1|a|U|1458
7K00|1|a|G|1459

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L17

Coloring options:


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