HL_7K4L_005

3D structure

PDB id

7K4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dengue 5'UTR SLA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

7K4L|5|A|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K4L_005 not in the Motif Atlas

Geometric match to HL_8C3A_043

Geometric discrepancy: 0.2126

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7K4L|5|A|U|18
7K4L|5|A|U|19
7K4L|5|A|U|20
7K4L|5|A|C|21
7K4L|5|A|G|22
7K4L|5|A|A|23

Current chains

Chain A

DenvSLA RNA

Nearby chains