HL_7K50_034

3D structure

PDB id

7K50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7K50|1|1|A|1392, 7K50|1|1|U|1396, 7K50|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K50_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1844

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7K50|1|1|G|1389
7K50|1|1|U|1390
7K50|1|1|U|1391
7K50|1|1|A|1392
7K50|1|1|A|1393
7K50|1|1|U|1394
7K50|1|1|A|1395
7K50|1|1|U|1396
7K50|1|1|U|1397
7K50|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23