7K50 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7K50_001 | 1/1/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_19368.1 | |
| HL_7K50_002 | 1/1/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_36514.1 | |
| HL_7K50_003 | 1/1/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_70546.3 | |
| HL_7K50_004 | 1/1/137:142 | No text annotation Not in a motif group | ||
| HL_7K50_005 | 1/1/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_59342.1 | |
| HL_7K50_006 | 1/1/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.4 | |
| HL_7K50_007 | 1/1/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_56241.3 | |
| HL_7K50_008 | 1/1/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.8 | |
| HL_7K50_009 | 1/1/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_23932.1 | |
| HL_7K50_010 | 1/1/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.11 | |
| HL_7K50_011 | 1/1/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.5 | |
| HL_7K50_012 | 1/1/410:417 | No text annotation Not in a motif group | homologous HL_7A0S_014 HL_96598.3 | |
| HL_7K50_013 | 1/1/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_85603.2 | |
| HL_7K50_014 | 1/1/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_85603.2 | |
| HL_7K50_015 | 1/1/545:548 | No text annotation Not in a motif group | ||
| HL_7K50_016 | 1/1/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_23932.1 | |
| HL_7K50_017 | 1/1/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.5 | |
| HL_7K50_018 | 1/1/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_85603.2 | |
| HL_7K50_112 | 1/1/641:647 | No text annotation Not in a motif group | ||
| HL_7K50_020 | 1/1/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.4 | |
| HL_7K50_021 | 1/1/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.8 | |
| HL_7K50_022 | 1/1/779:785 | No text annotation Not in a motif group | geometric HL_7A0S_007 HL_56241.3 | |
| HL_7K50_023 | 1/1/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
| HL_7K50_024 | 1/1/884:892 | No text annotation Not in a motif group | ||
| HL_7K50_025 | 1/1/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_85603.2 | |
| HL_7K50_026 | 1/1/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_28421.1 | |
| HL_7K50_027 | 1/1/1064:1074 | No text annotation Not in a motif group | ||
| HL_7K50_028 | 1/1/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.4 | |
| HL_7K50_029 | 1/1/1171:1178 | No text annotation Not in a motif group | ||
| HL_7K50_030 | 1/1/1222:1227 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_29031.1 | |
| HL_7K50_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_15422.1 | |
| HL_7K50_032 | 1/1/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_42228.1 | |
| HL_7K50_033 | 1/1/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_29031.1 | |
| HL_7K50_034 | 1/1/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_38060.1 | |
| HL_7K50_035 | 1/1/1451:1459 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_46535.1 | |
| HL_7K50_036 | 1/1/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_42228.1 | |
| HL_7K50_037 | 1/1/1533:1538 | No text annotation Not in a motif group | ||
| HL_7K50_038 | 1/1/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_11871.1 | |
| HL_7K50_039 | 1/1/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_7K50_040 | 1/1/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_58029.1 | |
| HL_7K50_041 | 1/1/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 NA | |
| HL_7K50_042 | 1/1/1727:1733 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.5 | |
| HL_7K50_043 | 1/1/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.7 | |
| HL_7K50_044 | 1/1/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.6 | |
| HL_7K50_045 | 1/1/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_85603.2 | |
| HL_7K50_046 | 1/1/1868:1873 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_74284.1 | |
| HL_7K50_047 | 1/1/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_84702.1 | |
| HL_7K50_048 | 1/1/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.2 | |
| HL_7K50_049 | 1/1/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.7 | |
| HL_7K50_050 | 1/1/2142:2149 | No text annotation Not in a motif group | ||
| HL_7K50_051 | 1/1/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.7 | |
| HL_7K50_052 | 1/1/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_7K50_053 | 1/1/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_7K50_054 | 1/1/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 NA | |
| HL_7K50_113 | 1/1/2324:2331 | No text annotation Not in a motif group | ||
| HL_7K50_056 | 1/1/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_29031.1 | |
| HL_7K50_057 | 1/1/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_85603.2 | |
| HL_7K50_058 | 1/1/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_14199.1 | |
| HL_7K50_059 | 1/1/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.4 | |
| HL_7K50_060 | 1/1/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_78499.1 | |
| HL_7K50_061 | 1/1/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 HL_64107.1 | |
| HL_7K50_062 | 1/1/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_85603.2 | |
| HL_7K50_063 | 1/1/2658:2663 | No text annotation Not in a motif group | geometric HL_7A0S_063 HL_85603.2 | |
| HL_7K50_064 | 1/1/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_00828.1 | |
| HL_7K50_065 | 1/1/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.8 | |
| HL_7K50_066 | 1/1/2795:2801 | Other HL Not in a motif group | homologous HL_5J7L_200 HL_34168.4 | |
| HL_7K50_067 | 1/1/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_64690.3 | |
| HL_7K50_068 | 1/1/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_85603.2 | |
| HL_7K50_114 | 1/2/34:48 | No text annotation Not in a motif group | ||
| HL_7K50_069 | 1/2/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_83767.2 | |
| HL_7K50_070 | 1/2/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_11871.1 | |
| HL_7K50_071 | 1/3/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_7K50_072 | 1/3/78:91 | No text annotation Not in a motif group | ||
| HL_7K50_073 | 1/3/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_85603.2 | |
| HL_7K50_074 | 1/3/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_85603.2 | |
| HL_7K50_075 | 1/3/206:213 | No text annotation Not in a motif group | ||
| HL_7K50_076 | 1/3/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_61911.1 | |
| HL_7K50_077 | 1/3/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_85603.2 | |
| HL_7K50_078 | 1/3/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_7K50_079 | 1/3/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.2 | |
| HL_7K50_080 | 1/3/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_85603.2 | |
| HL_7K50_081 | 1/3/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_29960.2 | |
| HL_7K50_082 | 1/3/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.4 | |
| HL_7K50_083 | 1/3/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_70546.3 | |
| HL_7K50_084 | 1/3/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.4 | |
| HL_7K50_085 | 1/3/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.2 | |
| HL_7K50_086 | 1/3/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_29031.1 | |
| HL_7K50_087 | 1/3/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.2 | |
| HL_7K50_088 | 1/3/840:846 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_96598.3 | |
| HL_7K50_089 | 1/3/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.2 | |
| HL_7K50_090 | 1/3/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.2 | |
| HL_7K50_091 | 1/3/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 HL_50779.1 | |
| HL_7K50_092 | 1/3/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.2 | |
| HL_7K50_093 | 1/3/1028:1033 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_44926.1 | |
| HL_7K50_094 | 1/3/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.2 | |
| HL_7K50_095 | 1/3/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_7K50_096 | 1/3/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_7K50_097 | 1/3/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_34217.1 | |
| HL_7K50_098 | 1/3/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.2 | |
| HL_7K50_099 | 1/3/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_23932.1 | |
| HL_7K50_100 | 1/3/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_30445.1 | |
| HL_7K50_101 | 1/3/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_29960.2 | |
| HL_7K50_102 | 1/3/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 HL_57293.1 | |
| HL_7K50_103 | 1/5/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 HL_25462.4 | |
| HL_7K50_104 | 1/5/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_36427.1 | |
| HL_7K50_105 | 1/5/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5WT1_003 HL_15422.1 | |
| HL_7K50_106 | 1/6/13:22 | No text annotation Not in a motif group | homologous HL_5E81_205 NA | |
| HL_7K50_107 | 1/6/31:39 | No text annotation Not in a motif group | homologous HL_5UD5_002 HL_66836.1 | |
| HL_7K50_108 | 1/6/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5UD5_003 HL_45820.1 | |
| HL_7K50_109 | 1/7/13:22 | No text annotation Not in a motif group | ||
| HL_7K50_110 | 1/7/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_5IBB_210 HL_36427.1 | |
| HL_7K50_111 | 1/7/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WT8_217 HL_45820.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7K50_019 | No text annotation | ||
| HL_7K50_055 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7K50_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.7 | |
| IL_7K50_002 | 1/1/36:37, 1/1/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.8 | |
| IL_7K50_003 | 1/1/43:44, 1/1/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.6 | |
| IL_7K50_004 | 1/1/81:85, 1/1/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_7K50_005 | 1/1/183:184, 1/1/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_11389.1 | |
| IL_7K50_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 NA | |
| IL_7K50_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.3 | |
| IL_7K50_008 | 1/1/269:271, 1/1/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_7K50_009 | 1/1/274:282, 1/1/358:363 | No text annotation Not in a motif group | ||
| IL_7K50_010 | 1/1/293:295, 1/1/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.2 | |
| IL_7K50_011 | 1/1/481:484, 1/1/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.7 | |
| IL_7K50_012 | 1/1/536:539, 1/1/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.12 | |
| IL_7K50_013 | 1/1/564:566, 1/1/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_64928.1 | |
| IL_7K50_014 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.3 | |
| IL_7K50_015 | 1/1/672:674, 1/1/806:808 | No text annotation Not in a motif group | homologous IL_7A0S_014 IL_64928.1 | |
| IL_7K50_016 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.7 | |
| IL_7K50_017 | 1/1/697:698, 1/1/763:765 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.8 | |
| IL_7K50_018 | 1/1/702:703, 1/1/728:730 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.5 | |
| IL_7K50_019 | 1/1/703:707, 1/1/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_95716.1 | |
| IL_7K50_020 | 1/1/738:740, 1/1/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.5 | |
| IL_7K50_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.8 | |
| IL_7K50_022 | 1/1/837:838, 1/1/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
| IL_7K50_023 | 1/1/844:847, 1/1/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_38420.1 | |
| IL_7K50_176 | 1/1/844:848, 1/1/930:934 | No text annotation Not in a motif group | ||
| IL_7K50_024 | 1/1/847:848, 1/1/930:933 | Stack outside cWW Not in a motif group | homologous IL_5J7L_268 IL_68444.1 | |
| IL_7K50_025 | 1/1/850:851, 1/1/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_67809.1 | |
| IL_7K50_026 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_7K50_027 | 1/1/862:863, 1/1/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.5 | |
| IL_7K50_028 | 1/1/864:868, 1/1/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.8 | |
| IL_7K50_029 | 1/1/870:872, 1/1/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_64928.1 | |
| IL_7K50_030 | 1/1/875:879, 1/1/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_08257.1 | |
| IL_7K50_031 | 1/1/880:881, 1/1/895:897 | Single bulged A Not in a motif group | geometric IL_4V9F_032 IL_37497.8 | |
| IL_7K50_032 | 1/1/994:996, 1/1/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_7K50_033 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.3 | |
| IL_7K50_034 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_71457.1 | |
| IL_7K50_035 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.18 | |
| IL_7K50_036 | 1/1/1018:1024, 1/1/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.4 | |
| IL_7K50_037 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.2 | |
| IL_7K50_038 | 1/1/1031:1034, 1/1/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_7K50_039 | 1/1/1038:1041, 1/1/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_73915.1 | |
| IL_7K50_040 | 1/1/1043:1051, 1/1/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.5 | |
| IL_7K50_041 | 1/1/1059:1062, 1/1/1076:1079 | No text annotation Not in a motif group | ||
| IL_7K50_042 | 1/1/1087:1090, 1/1/1101:1102 | Major groove platform Not in a motif group | geometric IL_4V9F_044 IL_20624.1 | |
| IL_7K50_043 | 1/1/1196:1198, 1/1/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_73554.1 | |
| IL_7K50_044 | 1/1/1202:1206, 1/1/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_7K50_045 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.4 | |
| IL_7K50_046 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.8 | |
| IL_7K50_047 | 1/1/1310:1313, 1/1/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_7K50_048 | 1/1/1319:1323, 1/1/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.8 | |
| IL_7K50_049 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.3 | |
| IL_7K50_050 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.3 | |
| IL_7K50_051 | 1/1/1415:1416, 1/1/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_7K50_052 | 1/1/1417:1421, 1/1/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.3 | |
| IL_7K50_053 | 1/1/1432:1435, 1/1/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.2 | |
| IL_7K50_054 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.2 | |
| IL_7K50_055 | 1/1/1450:1451, 1/1/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.18 | |
| IL_7K50_056 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.3 | |
| IL_7K50_057 | 1/1/1474:1478, 1/1/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.3 | |
| IL_7K50_058 | 1/1/1481:1482, 1/1/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.5 | |
| IL_7K50_059 | 1/1/1489:1491, 1/1/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.8 | |
| IL_7K50_060 | 1/1/1526:1529, 1/1/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.3 | |
| IL_7K50_061 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.3 | |
| IL_7K50_062 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.8 | |
| IL_7K50_063 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.3 | |
| IL_7K50_177 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation Not in a motif group | ||
| IL_7K50_064 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_68582.1 | |
| IL_7K50_065 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 NA | |
| IL_7K50_066 | 1/1/1712:1718, 1/1/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_7K50_067 | 1/1/1720:1724, 1/1/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_95716.1 | |
| IL_7K50_068 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.8 | |
| IL_7K50_069 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_7K50_070 | 1/1/1837:1840, 1/1/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.4 | |
| IL_7K50_071 | 1/1/1841:1842, 1/1/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_92880.1 | |
| IL_7K50_072 | 1/1/1846:1849, 1/1/1893:1894 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.10 | |
| IL_7K50_178 | 1/1/1851:1860, 1/1/1882:1891 | No text annotation Not in a motif group | ||
| IL_7K50_073 | 1/1/1864:1867, 1/1/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.2 | |
| IL_7K50_074 | 1/1/1933:1934, 1/1/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 NA | |
| IL_7K50_075 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_04332.1 | |
| IL_7K50_076 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.5 | |
| IL_7K50_077 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.6 | |
| IL_7K50_078 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.18 | |
| IL_7K50_079 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
| IL_7K50_080 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.9 | |
| IL_7K50_081 | 1/1/2085:2087, 1/1/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_64928.1 | |
| IL_7K50_179 | 1/1/2098:2100, 1/1/2189:2191 | No text annotation Not in a motif group | ||
| IL_7K50_180 | 1/1/2102:2121, 1/1/2177:2187 | No text annotation Not in a motif group | ||
| IL_7K50_181 | 1/1/2124:2137, 1/1/2154:2174 | No text annotation Not in a motif group | ||
| IL_7K50_082 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.18 | |
| IL_7K50_083 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.12 | |
| IL_7K50_084 | 1/1/2401:2403, 1/1/2414:2415 | No text annotation Not in a motif group | ||
| IL_7K50_085 | 1/1/2453:2454, 1/1/2498:2500 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_11389.1 | |
| IL_7K50_086 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 NA | |
| IL_7K50_087 | 1/1/2457:2459, 1/1/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.5 | |
| IL_7K50_088 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_47499.1 | |
| IL_7K50_089 | 1/1/2466:2470, 1/1/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_93820.1 | |
| IL_7K50_090 | 1/1/2507:2508, 1/1/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_7K50_091 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 NA | |
| IL_7K50_092 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_24807.1 | |
| IL_7K50_093 | 1/1/2522:2523, 1/1/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.5 | |
| IL_7K50_094 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
| IL_7K50_095 | 1/1/2636:2640, 1/1/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.2 | |
| IL_7K50_096 | 1/1/2652:2658, 1/1/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.2 | |
| IL_7K50_097 | 1/1/2680:2684, 1/1/2725:2727 | C-loop Not in a motif group | homologous IL_7A0S_095 IL_63596.8 | |
| IL_7K50_098 | 1/1/2687:2691, 1/1/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.4 | |
| IL_7K50_099 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_24807.1 | |
| IL_7K50_100 | 1/1/2737:2742, 1/1/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.7 | |
| IL_7K50_101 | 1/1/2806:2811, 1/1/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_7K50_102 | 1/1/2838:2839, 1/1/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_92880.1 | |
| IL_7K50_103 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_64231.1 | |
| IL_7K50_104 | 1/1/2847:2852, 1/1/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_45735.1 | |
| IL_7K50_105 | 1/2/17:18, 1/2/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.8 | |
| IL_7K50_106 | 1/2/23:28, 1/2/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_7K50_107 | 1/2/30:31, 1/2/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.10 | |
| IL_7K50_108 | 1/2/34:38, 1/2/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.8 | |
| IL_7K50_109 | 1/2/71:79, 1/2/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.5 | |
| IL_7K50_110 | 1/3/30:32, 1/3/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.5 | |
| IL_7K50_111 | 1/3/44:45, 1/3/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.8 | |
| IL_7K50_112 | 1/3/47:52, 1/3/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_14177.1 | |
| IL_7K50_113 | 1/3/54:56, 1/3/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_80097.3 | |
| IL_7K50_114 | 1/3/63:66, 1/3/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_99483.1 | |
| IL_7K50_115 | 1/3/67:69, 1/3/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_30659.1 | |
| IL_7K50_116 | 1/3/70:73, 1/3/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_7K50_117 | 1/3/75:78, 1/3/91:95 | No text annotation Not in a motif group | ||
| IL_7K50_118 | 1/3/128:131, 1/3/231:233 | No text annotation Not in a motif group | ||
| IL_7K50_119 | 1/3/132:136, 1/3/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_64231.1 | |
| IL_7K50_120 | 1/3/144:146, 1/3/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_66171.1 | |
| IL_7K50_121 | 1/3/147:153, 1/3/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.3 | |
| IL_7K50_122 | 1/3/203:206, 1/3/213:214 | No text annotation Not in a motif group | ||
| IL_7K50_123 | 1/3/242:247, 1/3/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.4 | |
| IL_7K50_124 | 1/3/249:252, 1/3/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.3 | |
| IL_7K50_125 | 1/3/292:293, 1/3/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_7K50_126 | 1/3/367:369, 1/3/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.18 | |
| IL_7K50_127 | 1/3/371:375, 1/3/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_7K50_128 | 1/3/375:376, 1/3/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.5 | |
| IL_7K50_129 | 1/3/409:416, 1/3/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.2 | |
| IL_7K50_130 | 1/3/440:442, 1/3/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_7K50_131 | 1/3/446:450, 1/3/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_7K50_132 | 1/3/450:455, 1/3/477:483 | No text annotation Not in a motif group | homologous IL_5J7L_023 IL_70801.1 | |
| IL_7K50_133 | 1/3/504:511, 1/3/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15261.1 | |
| IL_7K50_134 | 1/3/515:521, 1/3/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 IL_54177.1 | |
| IL_7K50_135 | 1/3/569:575, 1/3/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.2 | |
| IL_7K50_136 | 1/3/580:584, 1/3/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.3 | |
| IL_7K50_137 | 1/3/594:596, 1/3/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.5 | |
| IL_7K50_138 | 1/3/597:598, 1/3/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.10 | |
| IL_7K50_139 | 1/3/605:612, 1/3/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.2 | |
| IL_7K50_140 | 1/3/654:655, 1/3/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
| IL_7K50_141 | 1/3/659:660, 1/3/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_67809.1 | |
| IL_7K50_142 | 1/3/662:666, 1/3/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.2 | |
| IL_7K50_182 | 1/3/673:677, 1/3/713:717 | No text annotation Not in a motif group | ||
| IL_7K50_144 | 1/3/684:688, 1/3/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.4 | |
| IL_7K50_145 | 1/3/774:778, 1/3/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_7K50_146 | 1/3/779:783, 1/3/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.3 | |
| IL_7K50_147 | 1/3/887:894, 1/3/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_74733.1 | |
| IL_7K50_148 | 1/3/922:923, 1/3/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.8 | |
| IL_7K50_149 | 1/3/925:927, 1/3/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.5 | |
| IL_7K50_150 | 1/3/933:935, 1/3/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.2 | |
| IL_7K50_151 | 1/3/953:954, 1/3/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_7K50_152 | 1/3/993:997, 1/3/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.2 | |
| IL_7K50_153 | 1/3/998:999, 1/3/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_67809.1 | |
| IL_7K50_183 | 1/3/1003:1006, 1/3/1023:1037 | No text annotation Not in a motif group | ||
| IL_7K50_154 | 1/3/1048:1050, 1/3/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.18 | |
| IL_7K50_184 | 1/3/1052:1056, 1/3/1204:1206 | No text annotation Not in a motif group | ||
| IL_7K50_156 | 1/3/1057:1058, 1/3/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_36388.1 | |
| IL_7K50_157 | 1/3/1060:1061, 1/3/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.18 | |
| IL_7K50_158 | 1/3/1061:1063, 1/3/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_64928.1 | |
| IL_7K50_159 | 1/3/1124:1128, 1/3/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_06691.1 | |
| IL_7K50_160 | 1/3/1129:1132, 1/3/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_7K50_161 | 1/3/1158:1161, 1/3/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_7K50_162 | 1/3/1247:1253, 1/3/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_7K50_163 | 1/3/1255:1258, 1/3/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_7K50_164 | 1/3/1259:1263, 1/3/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_08257.1 | |
| IL_7K50_165 | 1/3/1303:1308, 1/3/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_53985.1 | |
| IL_7K50_166 | 1/3/1399:1401, 1/3/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_61438.1 | |
| IL_7K50_167 | 1/3/1401:1404, 1/3/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_65718.1 | |
| IL_7K50_168 | 1/3/1405:1407, 1/3/1494:1496 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_64928.1 | |
| IL_7K50_169 | 1/3/1407:1409, 1/3/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.3 | |
| IL_7K50_170 | 1/3/1412:1414, 1/3/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_64928.1 | |
| IL_7K50_171 | 1/3/1416:1419, 1/3/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.12 | |
| IL_7K50_172 | 1/3/1430:1435, 1/3/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_7K50_173 | 1/3/1440:1442, 1/3/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_80097.3 | |
| IL_7K50_174 | 1/3/1445:1448, 1/3/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7K50_143 | No text annotation | ||
| IL_7K50_155 | Tandem non-canonical cWW pairs | ||
| IL_7K50_175 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7K50_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_7K50_027 | 1/1/30:31, 1/1/474:484, 1/1/496:510 | No text annotation Not in a motif group | ||
| J3_7K50_028 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation Not in a motif group | ||
| J3_7K50_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_7K50_029 | 1/1/297:301, 1/1/316:325, 1/1/337:341 | No text annotation Not in a motif group | ||
| J3_7K50_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_7K50_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_7K50_030 | 1/1/1055:1058, 1/1/1080:1087, 1/1/1102:1104 | No text annotation Not in a motif group | ||
| J3_7K50_006 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_7K50_007 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_7K50_008 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_7K50_031 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation Not in a motif group | ||
| J3_7K50_009 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_7K50_032 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation Not in a motif group | ||
| J3_7K50_010 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation Not in a motif group | ||
| J3_7K50_011 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_7K50_012 | 1/1/2789:2791, 1/1/2805:2806, 1/1/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_7K50_013 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_7K50_014 | 1/2/10:16, 1/2/68:70, 1/2/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA | |
| J3_7K50_015 | 1/3/46:47, 1/3/361:367, 1/3/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_7K50_033 | 1/3/46:52, 1/3/359:367, 1/3/393:395 | No text annotation Not in a motif group | ||
| J3_7K50_016 | 1/3/586:588, 1/3/651:654, 1/3/754:755 | No text annotation Not in a motif group | ||
| J3_7K50_034 | 1/3/586:588, 1/3/651:655, 1/3/751:755 | No text annotation Not in a motif group | ||
| J3_7K50_017 | 1/3/672:673, 1/3/717:725, 1/3/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_7K50_018 | 1/3/826:829, 1/3/857:861, 1/3/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_7K50_035 | 1/3/936:939, 1/3/1344:1350, 1/3/1372:1379 | No text annotation Not in a motif group | ||
| J3_7K50_019 | 1/3/943:946, 1/3/1235:1237, 1/3/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_7K50_020 | 1/3/955:962, 1/3/973:984, 1/3/1221:1225 | No text annotation Not in a motif group | ||
| J3_7K50_021 | 1/3/990:993, 1/3/1045:1047, 1/3/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_7K50_036 | 1/3/990:997, 1/3/1044:1047, 1/3/1210:1215 | No text annotation Not in a motif group | ||
| J3_7K50_022 | 1/3/1003:1007, 1/3/1022:1028, 1/3/1033:1037 | No text annotation Not in a motif group | ||
| J3_7K50_023 | 1/3/1063:1068, 1/3/1107:1113, 1/3/1187:1193 | No text annotation Not in a motif group | ||
| J3_7K50_024 | 1/3/1073:1074, 1/3/1083:1087, 1/3/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_7K50_025 | 1/3/1116:1118, 1/3/1155:1158, 1/3/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_7K50_037 | 1/3/1116:1118, 1/3/1155:1161, 1/3/1175:1184 | No text annotation Not in a motif group | ||
| J3_7K50_026 | 1/3/1237:1241, 1/3/1296:1303, 1/3/1334:1337 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA | |
| J3_7K50_038 | 1/6/7:10, 1/6/25:27, 1/6/43:66 | No text annotation Not in a motif group | ||
| J4_7K50_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation Not in a motif group | ||
| J4_7K50_002 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation Not in a motif group | ||
| J4_7K50_003 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation Not in a motif group | ||
| J4_7K50_004 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation Not in a motif group | ||
| J4_7K50_005 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation Not in a motif group | ||
| J4_7K50_006 | 1/1/1444:1445, 1/1/1466:1467, 1/1/1525:1526, 1/1/1546:1547 | No text annotation Not in a motif group | ||
| J4_7K50_007 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation Not in a motif group | ||
| J4_7K50_008 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation Not in a motif group | ||
| J4_7K50_009 | 1/1/2285:2289, 1/1/2343:2347, 1/1/2370:2372, 1/1/2381:2383 | No text annotation Not in a motif group | ||
| J4_7K50_010 | 1/1/2643:2646, 1/1/2674:2676, 1/1/2731:2735, 1/1/2769:2771 | No text annotation Not in a motif group | ||
| J4_7K50_011 | 1/3/115:122, 1/3/239:240, 1/3/286:289, 1/3/311:312 | No text annotation Not in a motif group | ||
| J4_7K50_012 | 1/3/142:144, 1/3/178:184, 1/3/193:198, 1/3/219:221 | No text annotation Not in a motif group | ||
| J4_7K50_013 | 1/3/575:577, 1/3/764:769, 1/3/810:821, 1/3/879:880 | No text annotation Not in a motif group | ||
| J4_7K50_014 | 1/5/7:10, 1/5/25:27, 1/5/43:49, 1/5/65:66 | No text annotation Not in a motif group | ||
| J4_7K50_015 | 1/7/7:10, 1/7/25:27, 1/7/43:49, 1/7/65:66 | No text annotation Not in a motif group | ||
| J5_7K50_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation Not in a motif group | ||
| J5_7K50_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation Not in a motif group | ||
| J5_7K50_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation Not in a motif group | ||
| J5_7K50_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation Not in a motif group | ||
| J5_7K50_005 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2588, 1/1/2606:2611 | No text annotation Not in a motif group | ||
| J5_7K50_006 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation Not in a motif group | ||
| J5_7K50_007 | 1/3/36:39, 1/3/403:406, 1/3/436:440, 1/3/497:500, 1/3/545:548 | No text annotation Not in a motif group | ||
| J5_7K50_008 | 1/3/36:39, 1/3/403:406, 1/3/436:442, 1/3/492:500, 1/3/545:548 | No text annotation Not in a motif group | ||
| J5_7K50_009 | 1/3/58:61, 1/3/106:113, 1/3/314:316, 1/3/337:339, 1/3/350:354 | No text annotation Not in a motif group | ||
| J6_7K50_001 | 1/1/45:46, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:433 | No text annotation Not in a motif group | ||
| J6_7K50_002 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2435 | No text annotation Not in a motif group | ||
| J7_7K50_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation Not in a motif group | ||
| J7_7K50_002 | 1/1/817:822, 1/1/835:837, 1/1/942:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7K50_005 | No text annotation |
Coloring options: