HL_7K50_054

3D structure

PDB id

7K50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K50_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2287

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7K50|1|1|G|2303
7K50|1|1|G|2304
7K50|1|1|U|2305
7K50|1|1|C|2306
7K50|1|1|G|2307
7K50|1|1|G|2308
7K50|1|1|A|2309
7K50|1|1|C|2310
7K50|1|1|A|2311
7K50|1|1|U|2312
7K50|1|1|C|2313

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5