HL_7K51_053

3D structure

PDB id

7K51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7K51|1|1|A|2268, 7K51|1|1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K51_053 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1283

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7K51|1|1|C|2264
7K51|1|1|U|2265
7K51|1|1|A|2266
7K51|1|1|A|2267
7K51|1|1|A|2268
7K51|1|1|G|2269
7K51|1|1|A|2270
7K51|1|1|G|2271
7K51|1|1|U|2272
7K51|1|1|A|2273
7K51|1|1|A|2274
7K51|1|1|C|2275
7K51|1|1|G|2276

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27