HL_7K51_088

3D structure

PDB id

7K51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7K51|1|3|C|841, 7K51|1|3|U|842, 7K51|1|3|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K51_088 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.368

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7K51|1|3|C|840
7K51|1|3|C|841
7K51|1|3|U|842
7K51|1|3|U|843
7K51|1|3|G|844
7K51|1|3|A|845
7K51|1|3|G|846

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain W

30S ribosomal protein S18