HL_7K52_014

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

7K52|1|1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K52_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1393

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7K52|1|1|C|487
7K52|1|1|G|488
7K52|1|1|G|489
7K52|1|1|C|490
7K52|1|1|G|491
7K52|1|1|A|492
7K52|1|1|G|493

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L22