HL_7K52_058

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7K52|1|1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K52_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1027

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7K52|1|1|U|2404
7K52|1|1|G|2405
7K52|1|1|A|2406
7K52|1|1|A|2407
7K52|1|1|U|2408
7K52|1|1|G|2409
7K52|1|1|G|2410
7K52|1|1|A|2411
7K52|1|1|A|2412
7K52|1|1|G|2413

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15