HL_7K52_060

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7K52|1|1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K52_060 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1672

The information below is about HL_4WF9_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7K52|1|1|U|2528
7K52|1|1|G|2529
7K52|1|1|A|2530
7K52|1|1|A|2531
7K52|1|1|G|2532
7K52|1|1|U|2533
7K52|1|1|A|2534
7K52|1|1|G|2535

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Elongation factor G

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6