HL_7K52_065

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7K52|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K52_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0931

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7K52|1|1|C|2745
7K52|1|1|U|2746
7K52|1|1|G|2747
7K52|1|1|A|2748
7K52|1|1|A|2749
7K52|1|1|A|2750
7K52|1|1|G|2751
7K52|1|1|C|2752
7K52|1|1|A|2753
7K52|1|1|U|2754
7K52|1|1|C|2755
7K52|1|1|U|2756
7K52|1|1|A|2757
7K52|1|1|A|2758
7K52|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13