3D structure

PDB id
7K52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
7K52|1|3|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7K52_095 not in the Motif Atlas
Homologous match to HL_4LFB_025
Geometric discrepancy: 0.146
The information below is about HL_4LFB_025
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

7K52|1|3|G|1089
7K52|1|3|U|1090
7K52|1|3|U|1091
7K52|1|3|A|1092
7K52|1|3|A|1093
7K52|1|3|G|1094
7K52|1|3|U|1095
7K52|1|3|C|1096

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain L
30S ribosomal protein S7
Chain Z
30S ribosomal protein S21

Coloring options:


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