HL_7K54_104
3D structure
- PDB id
- 7K54 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7K54_104 not in the Motif Atlas
- Homologous match to HL_6JXM_003
- Geometric discrepancy: 0.1778
- The information below is about HL_6JXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
7K54|1|5|G|53
7K54|1|5|U|54
7K54|1|5|U|55
7K54|1|5|C|56
7K54|1|5|G|57
7K54|1|5|A|58
7K54|1|5|A|59
7K54|1|5|U|60
7K54|1|5|C|61
Current chains
- Chain 5
- tRNAPro
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- 50S ribosomal protein L5
- Chain m
- 50S ribosomal protein L16
Coloring options: