HL_7K5I_013

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K5I_013 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0896

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7K5I|1|2|C|618
7K5I|1|2|A|619
7K5I|1|2|G|620
7K5I|1|2|C|621
7K5I|1|2|C|622
7K5I|1|2|G|623

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain 1

SARS-COV-2 Nsp1

Chain X

40S ribosomal protein S23