HL_7K5I_018

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K5I_018 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1102

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7K5I|1|2|A|957
7K5I|1|2|G|958
7K5I|1|2|G|959
7K5I|1|2|U|960
7K5I|1|2|G|961
7K5I|1|2|A|962
7K5I|1|2|A|963
7K5I|1|2|A|964
7K5I|1|2|U|965
7K5I|1|2|U|966

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain O

40S ribosomal protein S14