HL_7K5I_020

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7K5I|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K5I_020 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1828

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7K5I|1|2|G|1054
7K5I|1|2|A|1055
7K5I|1|2|U|1056
7K5I|1|2|C|1057
7K5I|1|2|A|1058
7K5I|1|2|G|1059
7K5I|1|2|A|1060
7K5I|1|2|U|1061
7K5I|1|2|A|1062
7K5I|1|2|C|1063
7K5I|1|2|C|1064

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26