HL_7K5I_022

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7K5I_022 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0819

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7K5I|1|2|G|1141
7K5I|1|2|G|1142
7K5I|1|2|A|1143
7K5I|1|2|A|1144
7K5I|1|2|A|1145
7K5I|1|2|C|1146

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain C

40S ribosomal protein S2

Chain W

40S ribosomal protein S15a

Chain a

40S ribosomal protein S26