HL_7KGB_012

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

7KGB|1|A|G|412, 7KGB|1|A|A|413, 7KGB|1|A|G|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1026

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7KGB|1|A|G|410
7KGB|1|A|U|411
7KGB|1|A|G|412
7KGB|1|A|A|413
7KGB|1|A|G|414
7KGB|1|A|A|415
7KGB|1|A|G|416
7KGB|1|A|C|417
7KGB|1|A|C|418

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24