HL_7KGB_028

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

7KGB|1|A|U|1086, 7KGB|1|A|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_028 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1435

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7KGB|1|A|G|1083
7KGB|1|A|G|1084
7KGB|1|A|A|1085
7KGB|1|A|U|1086
7KGB|1|A|A|1087
7KGB|1|A|A|1088
7KGB|1|A|G|1089
7KGB|1|A|C|1090

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain v

50S ribosomal protein L37