HL_7KGB_059

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAAAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_059 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1115

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7KGB|1|A|U|2562
7KGB|1|A|G|2563
7KGB|1|A|U|2564
7KGB|1|A|A|2565
7KGB|1|A|A|2566
7KGB|1|A|A|2567
7KGB|1|A|U|2568
7KGB|1|A|G|2569

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L27

Chain y

Transfer RNA; tRNA