HL_7KGB_080

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUGACGGC

Length

9 nucleotides

Bulged bases

7KGB|1|a|G|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KGB_080 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1162

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7KGB|1|a|G|258
7KGB|1|a|G|259
7KGB|1|a|U|260
7KGB|1|a|G|261
7KGB|1|a|A|262
7KGB|1|a|C|263
7KGB|1|a|G|264
7KGB|1|a|G|265
7KGB|1|a|C|266

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20