HL_7KWG_008

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KWG_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1981

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7KWG|1|a|A|328
7KWG|1|a|A|329
7KWG|1|a|C|330
7KWG|1|a|U|331
7KWG|1|a|G|332
7KWG|1|a|A|333
7KWG|1|a|G|334
7KWG|1|a|A|335
7KWG|1|a|C|336
7KWG|1|a|A|337
7KWG|1|a|C|338
7KWG|1|a|G|339
7KWG|1|a|G|340
7KWG|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20