RNA 3D Hub //

7KWG Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7KWG_0011/a/13:23No text annotation
homologous
HL_5J7L_001
NA
HL_7KWG_0021/a/72:97No text annotation
HL_7KWG_0031/a/159:163No text annotation
HL_7KWG_0041/a/193:198No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7KWG_0061/a/267:275GNRA related
homologous
HL_5J7L_006
NA
HL_7KWG_0071/a/304:309GNRA
homologous
HL_5J7L_007
NA
HL_7KWG_0081/a/328:341No text annotation
homologous
HL_6CZR_079
NA
HL_7KWG_0091/a/350:355UNCG
homologous
HL_4LFB_009
HL_61337.5
HL_7KWG_0101/a/387:392GNRA
homologous
HL_4LFB_010
HL_34789.5
HL_7KWG_0111/a/427:432UNCG
homologous
HL_5J7L_011
NA
HL_7KWG_0121/a/466:486No text annotation
HL_7KWG_0131/a/530:535No text annotation
geometric
HL_5J7L_143
NA
HL_7KWG_0141/a/625:631GNRA-like with tWH
homologous
HL_4LFB_014
HL_86621.1
HL_7KWG_0151/a/697:706No text annotation
homologous
HL_6CZR_086
NA
HL_7KWG_0161/a/734:739GNRA
homologous
HL_5J7L_016
NA
HL_7KWG_0171/a/794:804No text annotation
homologous
HL_5J7L_017
NA
HL_7KWG_0181/a/848:856No text annotation
geometric
HL_2ZNI_001
HL_75660.9
HL_7KWG_0191/a/872:877GNRA
homologous
HL_5J7L_019
NA
HL_7KWG_0201/a/907:912GNRA
homologous
HL_4LFB_020
HL_34789.5
HL_7KWG_0211/a/973:982No text annotation
homologous
HL_4LFB_021
HL_97521.2
HL_7KWG_0241/a/1088:1093GNRA
homologous
HL_5J7L_023
NA
HL_7KWG_0251/a/1101:1108T-loop related
homologous
HL_4LFB_025
HL_63894.3
HL_7KWG_0271/a/1176:1182GNRA
homologous
HL_4LFB_027
HL_34789.5
HL_7KWG_0301/a/1367:1377No text annotation
homologous
HL_4LFB_030
HL_86432.2
HL_7KWG_0311/a/1461:1465Mini UNCG
geometric
HL_4YAZ_004
HL_90436.4
HL_7KWG_0321/a/1527:1532GNRA
geometric
HL_4WF9_054
HL_34789.5

Problematic loops

#loop idProblemSequence
HL_7KWG_005Mini UNCG
HL_7KWG_022GNRA
HL_7KWG_023No text annotation
HL_7KWG_033No text annotation
HL_7KWG_026No text annotation
HL_7KWG_028No text annotation
HL_7KWG_029T-loop with 3 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7KWG_0011/a/31:33,
1/a/560:561		Single bulged G
homologous
IL_6CZR_113
NA
IL_7KWG_0021/a/45:46,
1/a/404:406		Single bulged A
homologous
IL_5J7L_002
NA
IL_7KWG_0031/a/48:53,
1/a/367:369		No text annotation
homologous
IL_5J7L_003
NA
IL_7KWG_0041/a/55:57,
1/a/364:365		Minor groove platform
homologous
IL_4LFB_004
IL_34520.4
IL_7KWG_0051/a/64:67,
1/a/102:103		Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.4
IL_7KWG_0721/a/68:70,
1/a/99:101		Isolated non-canonical cWW pair
homologous
IL_6CZR_118
NA
IL_7KWG_0071/a/128:131,
1/a/239:240		Multiple bulged bases
homologous
IL_4LFB_007
IL_75289.2
IL_7KWG_0081/a/132:136,
1/a/235:238		No text annotation
homologous
IL_4LFB_008
IL_60988.3
IL_7KWG_0091/a/147:153,
1/a/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_7KWG_0101/a/154:156,
1/a/165:167		Isolated non-canonical cWW pair
geometric
IL_4E48_005
IL_01003.5
IL_7KWG_0111/a/157:159,
1/a/163:164		Single stack bend
geometric
IL_5J7L_044
NA
IL_7KWG_0731/a/184:185,
1/a/206:208		Single stack bend
geometric
IL_5J7L_032
NA
IL_7KWG_0121/a/250:255,
1/a/285:292		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.5
IL_7KWG_0131/a/257:260,
1/a/282:283		No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_7KWG_0141/a/300:301,
1/a/312:316		C-loop
homologous
IL_4LFB_013
IL_06671.2
IL_7KWG_0151/a/375:377,
1/a/400:401		Single bulged U
geometric
IL_4LFB_014
IL_97561.6
IL_7KWG_0161/a/379:383,
1/a/397:398		C-loop
homologous
IL_5J7L_018
NA
IL_7KWG_0171/a/383:384,
1/a/395:397		Single bulged G
geometric
IL_5J7L_019
NA
IL_7KWG_0181/a/417:424,
1/a/435:441		No text annotation
homologous
IL_4LFB_017
IL_62329.1
IL_7KWG_0681/a/454:466,
1/a/486:496		No text annotation
IL_7KWG_0191/a/512:519,
1/a/548:549		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_7KWG_0201/a/523:529,
1/a/536:544		Kink-turn related
homologous
IL_4LFB_021
IL_52042.2
IL_7KWG_0211/a/577:583,
1/a/890:891		No text annotation
homologous
IL_6CZR_134
NA
IL_7KWG_0221/a/588:592,
1/a/765:769		tSH-tWH-tHS
homologous
IL_4LFB_023
IL_05821.2
IL_7KWG_0231/a/602:604,
1/a/652:653		Major groove platform
homologous
IL_5J7L_028
NA
IL_7KWG_0241/a/605:606,
1/a/648:651		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
NA
IL_7KWG_0251/a/612:613,
1/a/640:642		Single bulged U
geometric
IL_5TBW_146
NA
IL_7KWG_0261/a/613:620,
1/a/636:640		No text annotation
homologous
IL_5J7L_030
NA
IL_7KWG_0271/a/662:663,
1/a/759:762		Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_74641.3
IL_7KWG_0281/a/664:666,
1/a/755:758		No text annotation
geometric
IL_6CZR_136
NA
IL_7KWG_0291/a/670:674,
1/a/748:751		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_7KWG_0701/a/681:685,
1/a/721:725		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.4
IL_7KWG_0311/a/692:696,
1/a/707:714		Kink-turn
homologous
IL_5J7L_035
NA
IL_7KWG_0321/a/782:787,
1/a/811:813		Other IL
geometric
IL_4V88_435
NA
IL_7KWG_0331/a/787:791,
1/a/807:811		tSH-tWH-tHS
geometric
IL_4LFB_033
IL_05821.2
IL_7KWG_0341/a/845:847,
1/a/858:859		Single stack bend
geometric
IL_7KGA_003
IL_15011.4
IL_7KWG_0351/a/847:848,
1/a/856:858		Single stack bend
geometric
IL_4C7O_002
IL_15011.4
IL_7KWG_0361/a/897:904,
1/a/915:920		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_7KWG_0371/a/932:933,
1/a/1404:1406		Single bulged A
homologous
IL_5J7L_039
NA
IL_7KWG_0381/a/935:937,
1/a/1401:1402		Single bulged G
homologous
IL_5J7L_040
NA
IL_7KWG_0741/a/1003:1007,
1/a/1056:1057		Minor groove platform
geometric
IL_4LFB_039
IL_49794.1
IL_7KWG_0441/a/1060:1062,
1/a/1219:1220		Single bulged U
homologous
IL_5J7L_046
NA
IL_7KWG_0451/a/1064:1068,
1/a/1215:1217		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.2
IL_7KWG_0461/a/1069:1070,
1/a/1210:1214		Minor groove platform
homologous
IL_5J7L_048
NA
IL_7KWG_0471/a/1072:1073,
1/a/1206:1208		Single bulged A
geometric
IL_5J7L_049
NA
IL_7KWG_0481/a/1073:1075,
1/a/1204:1206		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_7KWG_0531/a/1266:1269,
1/a/1288:1293		180 degree turn
homologous
IL_5J7L_055
NA
IL_7KWG_0561/a/1410:1412,
1/a/1513:1516		No text annotation
homologous
IL_5J7L_058
NA
IL_7KWG_0571/a/1412:1415,
1/a/1509:1513		No text annotation
homologous
IL_5J7L_059
NA
IL_7KWG_0581/a/1416:1418,
1/a/1506:1508		Isolated non-canonical cWW pair
geometric
IL_6IA2_002
IL_01003.5
IL_7KWG_0591/a/1418:1420,
1/a/1503:1506		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_7KWG_0601/a/1423:1425,
1/a/1498:1500		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_7KWG_0611/a/1427:1430,
1/a/1493:1496		Double sheared
homologous
IL_4LFB_060
IL_58355.3
IL_7KWG_0621/a/1435:1438,
1/a/1485:1488		Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_7KWG_0631/a/1441:1446,
1/a/1478:1482		Triple sheared related
geometric
IL_4V9F_018
IL_51313.1
IL_7KWG_0641/a/1446:1448,
1/a/1476:1478		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_01003.5
IL_7KWG_0651/a/1451:1454,
1/a/1471:1473		Isolated tHS basepair with bulges
geometric
IL_7RQB_012
NA
IL_7KWG_0661/a/1456:1459,
1/a/1467:1469		No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_7KWG_006Tandem non-canonical cWW pairs
IL_7KWG_067Partly complementary
IL_7KWG_069No text annotation
IL_7KWG_030No text annotation
IL_7KWG_039Minor groove platform
IL_7KWG_040No text annotation
IL_7KWG_041Major groove platform
IL_7KWG_071No text annotation
IL_7KWG_042No text annotation
IL_7KWG_043Minor groove platform
IL_7KWG_049Minor groove platform
IL_7KWG_050Minor groove platform
IL_7KWG_051No text annotation
IL_7KWG_052No text annotation
IL_7KWG_054Double sheared with non-canonical cWW
IL_7KWG_055No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7KWG_0011/a/47:48,
1/a/369:375,
1/a/401:403		No text annotation
homologous
J3_5J7L_001
NA
J3_7KWG_0131/a/47:53,
1/a/367:375,
1/a/401:403		No text annotation
homologous
J3_4LFB_014
J3_63856.2
J3_7KWG_0021/a/594:596,
1/a/659:662,
1/a/762:763		No text annotation
homologous
J3_5J7L_002
NA
J3_7KWG_0141/a/594:596,
1/a/659:663,
1/a/759:763		No text annotation
homologous
J3_5J7L_051
NA
J3_7KWG_0031/a/680:681,
1/a/725:733,
1/a/740:742		No text annotation
homologous
J3_5J7L_003
NA
J3_7KWG_0041/a/834:837,
1/a/867:871,
1/a/878:884		No text annotation
homologous
J3_5J7L_004
NA
J3_7KWG_0151/a/940:949,
1/a/1355:1361,
1/a/1383:1398		No text annotation
J3_7KWG_0161/a/963:972,
1/a/983:995,
1/a/1231:1239		No text annotation
J3_7KWG_0061/a/964:972,
1/a/983:995,
1/a/1231:1237		No text annotation
J3_7KWG_0071/a/1000:1003,
1/a/1057:1059,
1/a/1221:1226		No text annotation
J3_7KWG_0211/a/1000:1007,
1/a/1056:1059,
1/a/1221:1226		No text annotation
homologous
J3_6CZR_063
NA
J3_7KWG_0091/a/1075:1080,
1/a/1119:1125,
1/a/1198:1204		No text annotation
homologous
J3_5J7L_008
NA
J3_7KWG_0101/a/1085:1086,
1/a/1095:1099,
1/a/1110:1114		No text annotation
homologous
J3_6CZR_024
NA
J3_7KWG_0111/a/1128:1130,
1/a/1166:1169,
1/a/1192:1195		No text annotation
homologous
J3_5J7L_010
NA
J3_7KWG_0191/a/1128:1134,
1/a/1162:1169,
1/a/1192:1195		No text annotation
J3_7KWG_0201/a/1128:1134,
1/a/1162:1172,
1/a/1186:1195		No text annotation
J3_7KWG_0121/a/1248:1252,
1/a/1307:1314,
1/a/1345:1348		No text annotation
homologous
J3_4LFB_009
J3_03192.2
J4_7KWG_0011/a/114:122,
1/a/246:248,
1/a/294:297,
1/a/319:320		No text annotation
J4_7KWG_0041/a/142:144,
1/a/178:184,
1/a/208:213,
1/a/227:229		No text annotation
J4_7KWG_0031/a/583:585,
1/a/772:777,
1/a/818:829,
1/a/889:890		No text annotation
homologous
J4_5J7L_003
NA
J5_7KWG_0011/a/37:40,
1/a/411:414,
1/a/444:449,
1/a/501:508,
1/a/553:556		No text annotation
J5_7KWG_0021/a/59:62,
1/a/105:112,
1/a/322:324,
1/a/345:347,
1/a/358:362		No text annotation
homologous
J5_5J7L_003
NA

Problematic loops

#loop idProblemSequence
J3_7KWG_005No text annotation
J3_7KWG_017No text annotation
J3_7KWG_008No text annotation
J3_7KWG_018No text annotation
J4_7KWG_002No text annotation

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