HL_7KWG_028

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACCGCGAGGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7KWG_028 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3446

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7KWG|1|a|A|1274
7KWG|1|a|C|1275
7KWG|1|a|C|1276
7KWG|1|a|G|1277
7KWG|1|a|C|1278
7KWG|1|a|G|1279
7KWG|1|a|A|1280
7KWG|1|a|G|1281
7KWG|1|a|G|1282
7KWG|1|a|U|1283

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13