HL_7LH5_032
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LH5_032 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.1003
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
7LH5|1|AV|G|32
7LH5|1|AV|C|33
7LH5|1|AV|U|34
7LH5|1|AV|C|35
7LH5|1|AV|A|36
7LH5|1|AV|U|37
7LH5|1|AV|A|38
7LH5|1|AV|A|39
7LH5|1|AV|C|40
Current chains
- Chain AV
- P-site tRNA fMet
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- mRNA
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