HL_7LH5_075

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGUGAUGAGCC

Length

11 nucleotides

Bulged bases

7LH5|1|BA|A|1722, 7LH5|1|BA|U|1739, 7LH5|1|BA|G|1740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_075 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.204

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_64640.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7LH5|1|BA|G|1718
7LH5|1|BA|G|1719
7LH5|1|BA|U|1720
7LH5|1|BA|G|1721
7LH5|1|BA|A|1722
7LH5|1|BA|U|1739
7LH5|1|BA|G|1740
7LH5|1|BA|A|1741
7LH5|1|BA|G|1742
7LH5|1|BA|C|1743
7LH5|1|BA|C|1744

Current chains

Chain BA

23S ribosomal RNA

Nearby chains