HL_7LH5_172

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_172 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0687

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

7LH5|1|DA|G|1281
7LH5|1|DA|U|1282
7LH5|1|DA|G|1283
7LH5|1|DA|A|1284
7LH5|1|DA|G|1285
7LH5|1|DA|A|1286
7LH5|1|DA|A|1287
7LH5|1|DA|U|1288
7LH5|1|DA|C|1289

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DR

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22