HL_7LH5_185

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

7LH5|1|DA|A|1780, 7LH5|1|DA|C|1781, 7LH5|1|DA|C|1782, 7LH5|1|DA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_185 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0848

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7LH5|1|DA|U|1777
7LH5|1|DA|U|1778
7LH5|1|DA|U|1779
7LH5|1|DA|A|1780
7LH5|1|DA|C|1781
7LH5|1|DA|C|1782
7LH5|1|DA|A|1783
7LH5|1|DA|A|1784
7LH5|1|DA|A|1785
7LH5|1|DA|A|1786
7LH5|1|DA|A|1787

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2