HL_7LH5_192

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

7LH5|1|DA|G|2206, 7LH5|1|DA|G|2207, 7LH5|1|DA|U|2218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LH5_192 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2276

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

7LH5|1|DA|C|2205
7LH5|1|DA|G|2206
7LH5|1|DA|G|2207
7LH5|1|DA|A|2208
7LH5|1|DA|U|2218
7LH5|1|DA|G|2219

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DD

50S ribosomal protein L2